[1] Wei Pi-Jing, Sun Mingzhu, Ding Zheng, Cao Rui-Fen, Gao Zhen*, Zheng Chun-Hou*. DMDGRN: A data augmentation-based multilayer directed graph convolutional network for gene regulatory network inference[J]. Journal of Biomedical Informatics, 2026, 175: 104985. (中科院二区) [2] Gao Zhen, Su Yansen, Tang Jin, Jin Huaiwan, Ding Yun, Cao Rui-Fen, Wei Pi-Jing*, Zheng Chun-Hou*. AttentionGRN: a functional and directed graph transformer for gene regulatory network reconstruction from scRNA-seq data [J]. Briefings in Bioinformatics, 26(2): bbaf118, 2025. (中科院一区) [3] Gao Zhen, Su Yansen, Xia Junfeng, Cao Rui-Fen, Ding Yun, Zheng Chun-Hou*, Wei Pi-Jing*. DeepFGRN: inference of gene regulatory network with regulation type based on directed graph embedding [J]. Briefings in Bioinformatics, 25(3): bbae143, 2024. (中科院一区) [4] Gao Zhen, Tang Jin, Xia Junfeng, Zheng Chun-Hou*, Wei Pi-Jing*. CNNGRN: A Convolutional Neural Network-Based Method for Gene Regulatory Network Inference from Bulk Time-Series Expression Data [J]. IEEE/ACM Transactons on Computational Biology Bioinformatics, 20(5): 2853-2861, 2023. (中科院三区,CCF B类) [5] Gao Zhen, Wang Yu-Tian, Wu Qing-Wen, Li Lei, Ni Jian-Cheng*, Zheng Chun-Hou*. A new method based on matrix completion and non-negative matrix factorization for predicting disease-associated miRNAs [J]. IEEE/ACM Transactions on Computational Biology, 9(2): 763-772, 2020. (中科院三区,CCF B类) [6] Gao Zhen, Wang Yu-Tian, Wu Qing-Wen, Ni Jian-Cheng*, Zheng Chun-Hou*. Graph regularized L2,1-nonnegative matrix factorization for miRNA-disease association prediction [J]. BMC bioinformatics, 21(1): 61, 2020. (中科院三区) |